libuproc
1.2.0
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Modules
Data Structures
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Modules
Here is a list of all modules:
[detail level
1
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Sequence classification
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Protein classification
struct uproc_protresult
Protein classification result
object uproc_protclass
Protein sequence classifier
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ORF translation
struct uproc_orf
Open reading frame
object uproc_orfiter
Iterates over a DNA/RNA sequence and yield all possible ORFs
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DNA classification
struct uproc_dnaresult
DNA classification result
object uproc_dnaclass
DNA/RNA sequence classifier
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Input/output
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General IO
object uproc_io_stream
Optionally compressed I/O stream
Wrapped standard IO streams
Wrapped IO streams with gz compression
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Sequence IO
struct uproc_sequence
DNA/RNA or protein sequence
object uproc_seqiter
FASTA/FASTQ sequence iterator
Info about compile-time features
Error handling
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Data structures
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List
object uproc_list
List of homogenous items (also known as "vector" or "arraylist")
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Binary search tree
object uproc_bst
Binary search tree
object uproc_bstiter
BST in-order iterator
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2D double matrix
object uproc_matrix
2D matrix
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Evolutionary Curve
object uproc_ecurve
Evolutionary Curve
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Amino acid substitution matrix
object uproc_substmat
Array of matrices of amino acid distances
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ID map
object uproc_idmap
Map between protein family name and its numeric identifier
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Grp_datastructs_database
object uproc_database
Database
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Grp_datastructs_model
object uproc_model
Model
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Lower-level modules
Common definitions
Nucleotides and codons
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Amino acid translation alphabets
object uproc_alphabet
Amino acid alphabet
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Amino acid words
struct uproc_word
Amino acid word
object uproc_worditer
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