libuproc
1.2.0
|
Cuproc_alphabet | Amino acid alphabet. |
Cuproc_bst | Binary search tree. |
Cuproc_bst_key | The BST key type |
Cuproc_bstiter | BST in-order iterator. |
Cuproc_database | Database. |
Cuproc_dnaclass | DNA/RNA sequence classifier. |
Cuproc_dnaresult | DNA classification result. |
Cuproc_ecurve | Evolutionary Curve. |
Cuproc_ecurve_suffixentry | Pair of suffix and family |
Cuproc_idmap | Map between protein family name and its numeric identifier. |
Cuproc_io_stream | Optionally compressed I/O stream. |
Cuproc_list | List of homogenous items (also known as "vector" or "arraylist") |
Cuproc_matrix | 2D matrix |
Cuproc_model | Model. |
Cuproc_orf | Open reading frame. |
Cuproc_orfiter | Iterates over a DNA/RNA sequence and yield all possible ORFs. |
Cuproc_protclass | Protein sequence classifier. |
Cuproc_protresult | Protein classification result. |
Cuproc_sequence | DNA/RNA or protein sequence. |
Cuproc_substmat | Array of matrices of amino acid distances. |
Cuproc_word | Amino acid word. |